IGVFFI5219WRWY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3622WNKQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G2_P061_L003_R3

md5sum

6eccbaae2478b60b2b8f24fe99da7f9a

Content MD5sum

25ef58cdaf2915d1c373aec2a64180d5

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP013_G2_L002_P061_S2_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54454054

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5080SUXQ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples