IGVFFI5213AQNI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2017QGND(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G3_P055_L002_R3

md5sum

deb783cd2880a7c0e756ba9671ac13f2

Content MD5sum

59a25cc7226ff01135e25c6767a8a642

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP007_G3_L003_P055_S15_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63871094

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7646ONHX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples