IGVFFI5209ICBC

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5209ICBC/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5209ICBC",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_3962_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "fff98bf8e65b8c57992010aa5a0aaa91",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2024-08-20T15:19:06.349092+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS2855REKB/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS2855REKB",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "GRU"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/in-vitro-systems/IGVFSM6215AZOS/",
48                "@type": [
49                    "InVitroSystem",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM6215AZOS",
55                "classifications": [
56                    "cell line",
57                    "pooled cell specimen"
58                ],
59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/EFO_0004905/",
62                        "status": "released",
63                        "term_name": "induced pluripotent stem cell"
64                    }
65                ],
66                "status": "released",
67                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 199)",
68                "taxa": "Homo sapiens"
69            }
70        ],
71        "status": "released",
72        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
73    },
74    "file_size": 597806287,
75    "flowcell_id": "22523KLT3",
76    "gene_list_for": [],
77    "href": "/sequence-files/IGVFFI5209ICBC/@@download/IGVFFI5209ICBC.fastq.gz",
78    "illumina_read_type": "R2",
79    "input_file_for": [],
80    "integrated_in": [],
81    "lab": {
82        "@id": "/labs/jason-buenrostro/",
83        "title": "Jason Buenrostro, Broad"
84    },
85    "loci_list_for": [],
86    "maximum_read_length": 50,
87    "md5sum": "2805d9f1962c532426e2286cdee86a65",
88    "mean_read_length": 50,
89    "minimum_read_length": 50,
90    "quality_metrics": [],
91    "read_count": 22607795,
92    "read_names": [
93        "Read 2"
94    ],
95    "release_timestamp": "2025-04-22T04:09:46.105917+00:00",
96    "s3_uri": "s3://igvf-restricted-files/2024/08/20/aa5754f7-9197-4955-88f7-94d802d35938/IGVFFI5209ICBC.fastq.gz",
97    "schema_version": "15",
98    "seqspecs": [
99        "/configuration-files/IGVFFI7872ZHZZ/"
100    ],
101    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
102    "sequencing_platform": {
103        "@id": "/platform-terms/EFO_0022840/",
104        "status": "released",
105        "term_name": "Illumina NovaSeq X"
106    },
107    "sequencing_run": 3962,
108    "status": "released",
109    "submitted_by": {
110        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
111        "title": "Siddarth Wekhande"
112    },
113    "submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/cca2af5e-c2b5-4c00-9fab-f45a4a2745fa/wf_create_fastq_barcode/3d796a68-ac0d-40cf-8600-56bb1fced520/call-create_fastq_barcode/shard-0/SS-CoPA-703_L7_SS-PKR-199_SS-V1-1st-THIRD_R2.R2.fastq.gz",
114    "summary": "R2 reads from sequencing run 3962",
115    "upload_status": "validated",
116    "uuid": "aa5754f7-9197-4955-88f7-94d802d35938"
117}