IGVFFI5184JLAR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5733DNRB(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G7_P041_L004_R3

md5sum

ac19d2c155faf9a8191c267e816ad0f7

Content MD5sum

b1e258371a954bbfe57f6bdfa2a0af9b

File Size

2.7 GB

Submitted File Name

Multiome_ATAC_X040_G7_L007_P041_S9_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

88277264

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3718ZLPR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples