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IGVFFI5183LDFN

released
validated
File Set
IGVFDS3638UVNV(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 243
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2029_R2
bradley-bernstein:SS-LS_243_R2
buenrostro-bernstein:SS-LS_2029_R2
buenrostro-bernstein:SS-LS_243_R2
md5sum
2a039f2e8f382ca37d0c4e0e0fa7dbd1
Content MD5sum
f2c27f96e7fcde7e8ce2957ffa5ce216
File Size
411 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-154_L2_SS-PKR-129_SS-V1-RIGHT-HALF_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
243
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
8347681

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5709RHHR, IGVFFI5183LDFN
Jason Buenrostro, Broad
1.2 KB
validated