IGVFFI5158PGEA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0173RFIN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G4_P009_L001_I1

md5sum

6ef804fb2ce8836e73eb2267ef7732b8

Content MD5sum

1d8c202a5f14ad9fa7c3bf39d91fd31f

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X012_G4_L004_P009_S14_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161275198

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9021MNYU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples