IGVFFI5154USHE

released

validated

File Set

IGVFDS3120IRAP(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR3-Rep1_S285

md5sum

39afc4b78c4db619207bbc90c89c1f8a

Content MD5sum

0e7a6fc5cda6f21df9ed3c5e06075f54

File Size

26 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin6hrs-FF1-BinC-PCR3-Rep1_S285_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

GAAGGAAG:GCCA

Average Read Length

Read Count

1169504

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM2025NTWT

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of CCND1) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library