IGVFFI5150TKQL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2391MEXB(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G3_P061_L003_I1

md5sum

7b635e7aee16c9ca1168a6ecb683e163

Content MD5sum

964e2a8551651ad5da6994b9bd823a46

File Size

417 MB

Submitted File Name

Multiome_ATAC_RP013_G3_L003_P061_S3_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57109063

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2861OAVH

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples