IGVFFI5148DCVE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0856IUPF(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G6_P059_L007_I1

md5sum

f7b39fdeb180f8a86e0cd91db9c8322f

Content MD5sum

8288b0d796a1409be5e4e2853e6b7fe8

File Size

400 MB

Submitted File Name

Multiome_ATAC_RP011_G6_L006_P059_S78_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57628041

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6926MVZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples