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IGVFFI5144GHYJ

released
validated
File Set
IGVFDS5763YUNI(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp17_multi_10x4_NGS2_r1
md5sum
4066bb424fcd268161c380e315c84254
Content MD5sum
d908a0e47c21c05e76f84b8259604adc
File Size
181 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/MULTI/CMAS19_MULTI4_S173_L006_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCYLLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
8627575

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
624 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5144GHYJ, IGVFFI6171OXKO, IGVFFI2126VHQI, IGVFFI4455QNKO
Ansuman Satpathy, Stanford
1.3 KB
validated