IGVFFI5143PVUV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6638LYXU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G7_P077_L005_I1

md5sum

130909022e34b3992bb2f8980d995464

Content MD5sum

e2df073d1b56248a4575f2066d0e8cc1

File Size

421 MB

Submitted File Name

Multiome_ATAC_RP028_G7_L007_P077_S25_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58458739

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3393RSBM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples