IGVFFI5143OJFU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9627VAJD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G3_P003_L004_R1

md5sum

f3be938427e0c1609e0ef2e7c84f5d4a

Content MD5sum

80659c9aa89ab1c1d386bbdb3f85522d

File Size

5.7 GB

Submitted File Name

Multiome_ATAC_X005_G3_L003_P003_S21_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

180106214

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0319SKVZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples