IGVFFI5139ZCSS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8683RWTE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G7_P055_L003_I1

md5sum

0b775844588e3ea0f5390c97e3cc9923

Content MD5sum

f505c6295a05d5c52a14138fac3d00ef

File Size

404 MB

Submitted File Name

Multiome_ATAC_RP007_G7_L007_P055_S19_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55016892

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4219SNVI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples