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IGVFFI5138TGVX

released
validated
File Set
IGVFDS7053XLPM(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS21BC-more2-1-RNA.R1.fastq.gz
md5sum
9a27f65c4dd9bb3cc73511ef773f4d59
Content MD5sum
3b062499646e7b5ede29388aa58f8cd1
File Size
18 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS21BC-more2-1-RNA.R1.fastq.gz
Checkfiles Version
v14
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
100
Read Count
333917454

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
282 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5138TGVX, IGVFFI7632WZNX, IGVFFI6604XHYW
Jason Buenrostro, Broad
1.2 KB
validated