IGVFFI5136DYNS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1986QXQD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G1_P047_L003_I1

md5sum

7bdbb269c38738eff574745afabdc904

Content MD5sum

50996ea91f1bc3b346cc78853b9f7306

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X047_G1_L001_P047_S21_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

270491848

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6392OCPY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples