IGVFFI5132DAYW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9847KZJV(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G7_P045_L001_R2

md5sum

89379c91107863db82c97a72591bde86

Content MD5sum

9b3b85dae9b6d9e04f67e243c33f51d2

File Size

3.8 GB

Submitted File Name

Multiome_ATAC_X045_G7_L007_P045_S11_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

213025523

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3071DTOY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples