IGVFFI5117LNGH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2087DWUN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G5_P059_L007_R3

md5sum

f2b390ebd5d08d6bd615418b33f8f98b

Content MD5sum

c507ce35d02feb9463bc3e4b15a02473

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP010_G5_L005_P059_S69_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65867948

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8749HWYK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples