IGVFFI5117FTBY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4576XPLE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G4_P031_L001_R1

md5sum

b83bf42077affafae2bb685fca50a41d

Content MD5sum

6c198d84895b6bc3c5a4b0b0ea9e58be

File Size

14 GB

Submitted File Name

Multiome_ATAC_X031_G4_L004_P031_S10_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

257502974

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8255CJVL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples