IGVFFI5111CGSC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1023IVXT(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G1_P031_L001_R3

md5sum

22924ec71723966eacf2ea9b4c264ecf

Content MD5sum

35414086f4ba7313c1950d661b1240d7

File Size

15 GB

Submitted File Name

Multiome_ATAC_X031_G1_L001_P031_S7_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

276369542

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0810GEIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples