IGVFFI5105GTQM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7068ROMA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G5_P059_L005_I1

md5sum

a597087985ede1bd8e21bd6987076f21

Content MD5sum

4069f0751adf9bd70f8db256b5ba331e

File Size

506 MB

Submitted File Name

Multiome_ATAC_RP012_G5_L005_P059_S85_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66847772

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0752KTLR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples