IGVFFI5104LFFS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3970UULA(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G1_P065_L006_R2

md5sum

017b4bfd8481244fe44ca18a19960a2e

Content MD5sum

06eb7a30663981cf5b05e09817e8dd4b

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X050_G1_L001_P065_S31_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63263186

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1164RFEZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples