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INDEXED
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SequenceFile
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IGVFFI5101CZQV
IGVFFI5101CZQV
preview
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0986EJTQ
(single-nucleus ATAC-seq (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP025_G5_P069_L003_I1
md5sum
7f456c159e3727187c399e925605f984
Content MD5sum
e37c0e584b7c4fb70d423f5a8a2e09b2
File Size
1.9 GB
Submitted File Name
Multiome_ATAC_RP025_G5_L005_P069_S5_L003_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
272444758
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4968PVUL
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples