IGVFFI5092FVMU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5940RHAE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G2_P047_L003_I1

md5sum

853377343fdbdeb2e2bc6f09cbb38703

Content MD5sum

922afd4f0988046480935eddc1090eba

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X047_G2_L002_P047_S22_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

238017315

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8877ZHHC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples