IGVFFI5088XYPT

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5088XYPT/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5088XYPT",
10    "aliases": [
11        "chongyuan-luo:ys3e_snRNA_R2"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012079/",
19        "component": "networks"
20    },
21    "content_md5sum": "3fcef5e5a1f234e92f8eb3f308e32e87",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2025-01-17T19:54:01.408182+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS4458BDLN/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS4458BDLN",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0003109/",
37            "term_name": "single-nucleus RNA sequencing assay"
38        },
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM2167MERL/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM2167MERL",
49                "classifications": [
50                    "reprogrammed cell specimen",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/CL_0000057/",
58                        "status": "released",
59                        "term_name": "fibroblast"
60                    }
61                ],
62                "status": "released",
63                "summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples",
64                "taxa": "Homo sapiens",
65                "treatments": []
66            }
67        ],
68        "status": "released",
69        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
70    },
71    "file_size": 15483803892,
72    "gene_list_for": [],
73    "href": "/sequence-files/IGVFFI5088XYPT/@@download/IGVFFI5088XYPT.fastq.gz",
74    "illumina_read_type": "R2",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/chongyuan-luo/",
79        "title": "Chongyuan Luo, UCLA"
80    },
81    "loci_list_for": [],
82    "maximum_read_length": 101,
83    "md5sum": "aea2649f0647ac96b388cfc3d88737d1",
84    "mean_read_length": 101,
85    "minimum_read_length": 101,
86    "quality_metrics": [],
87    "read_count": 288810110,
88    "read_names": [
89        "Read 2"
90    ],
91    "release_timestamp": "2025-03-27T21:33:14.486248+00:00",
92    "s3_uri": "s3://igvf-files/2025/01/17/0bd92ca6-e60a-4664-92cb-53e24eb21be8/IGVFFI5088XYPT.fastq.gz",
93    "schema_version": "15",
94    "seqspecs": [
95        "/configuration-files/IGVFFI4360TPNP/"
96    ],
97    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
98    "sequencing_platform": {
99        "@id": "/platform-terms/EFO_0008637/",
100        "status": "released",
101        "term_name": "Illumina NovaSeq 6000"
102    },
103    "sequencing_run": 1,
104    "status": "released",
105    "submitted_by": {
106        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
107        "title": "Terence Li"
108    },
109    "submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/multiome/gex/IGVF2GEX-E_S5_L001_R2_001.fastq.gz",
110    "summary": "R2 reads from sequencing run 1",
111    "upload_status": "validated",
112    "uuid": "0bd92ca6-e60a-4664-92cb-53e24eb21be8"
113}