IGVFFI5088OJUA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6899OQTS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G2_P031_L003_R1

md5sum

7afd06f9b5502344c5b6d78d16eacff4

Content MD5sum

b9317478b77168602c5d9eae831499ee

File Size

14 GB

Submitted File Name

Multiome_ATAC_X032_G2_L002_P031_S38_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

265005945

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8298WTCX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples