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IGVFFI5082OJBI

released
validated
File Set
IGVFDS5476WHHS(lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide)
Summary
R3 reads from sequencing run 2
File Format
fastq
Content Type
reads
md5sum
bf239336200acda0978261795b0a3be3
Content MD5sum
c916e0f68adaab979426b99b1aca8c83
File Size
1.4 GB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/ag-kircher/IGVF_data_submssion_TM/proximalPromotor/run2/rna-3_S6_R3_001.fastq.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
seqrun2
Attribution
Nadav Ahituv, UCSF

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
2
Sequencing Kit
NextSeq 500 High Output v2 Kit
Illumina Read Type
R3
Average Read Length
15
Read Count
88995453

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Files Derived From This File

3 items
tsv
reporter experiment barcode
GRCh38 reporter experiment barcode
Nadav Ahituv, UCSF
246 MB
validated
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
20 MB
validated
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
19 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9629WYWP, IGVFFI5357LHEG, IGVFFI3537XINM, IGVFFI3584MRJO, IGVFFI6977PLLB, IGVFFI5082OJBI, IGVFFI0130HTTZ, IGVFFI5020DCDM, IGVFFI1164KXKU
Nadav Ahituv, UCSF
1.6 KB
validation exempted