IGVFFI5078FJXF

released

validated

File Set

IGVFDS6296UIVP(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR4_Rep2_S103

md5sum

edfa282aa1670e541f63decda06d0453

Content MD5sum

af65c444a7e326b2f7a62aa866552a8a

File Size

28 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinF-PCR4-Rep2_S103_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TAATGAAC:TCTC

Average Read Length

Read Count

1467855

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9724UBWS

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library