IGVFFI5059MBJN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1686QXQO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G8_P059_L008_R1

md5sum

3497258953709b4b41e51208ee23218a

Content MD5sum

d0f2db6a2bd0b813853073e0bc008fb5

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP012_G8_L008_P059_S88_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73179249

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9167CXIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples