IGVFFI5053JXDQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2028XESA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G5_P055_L002_R3

md5sum

1afadc1444c83816f1507859272f4096

Content MD5sum

66f64a3802fa5938d0f1b1ac8a304718

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP005_G5_L005_P055_S1_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51635880

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1655YUWG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples