IGVFFI5048UNQD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9587VFRN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G8_P041_L004_R1

md5sum

1ee9807689d72672fe28cd66e950e7ab

Content MD5sum

97664dd4b91c0319ea2ecbaf19dcdbe9

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X041_G8_L008_P041_S18_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56968158

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3938LXBP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples