IGVFFI5042FABZ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6358OTHG(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:240908-S029-PPIF_5SpliceSite-IndividualVariantExp-AGGT_TCCA-THP1-BioRep2-FFrep1-BinB-PCRrep1_I1
md5sum
936b8827fa26601c9e9df6330755091d
Content MD5sum
e7693619a7ba7adc2a726bf21becd685
File Size
4.0 MB
Submitted File Name
240908-S029-5splice-THP1-5splicesite_C10-Amp_PPIF_5splicesite-BioRep2-FFrep1-BinB-PCRrep1_S780_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Illumina Read Type
I1
Index
AACAATGG:CGCAGACG
Average Read Length
8
Read Count
521592

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Attribution