IGVFFI5032PCZR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6332PVTL(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X038_G5_P040_L004_I1

md5sum

98370def148e890e306809ea387062cf

Content MD5sum

b0cfd6be4dfc718eb6951dff38aa69ae

File Size

1.2 GB

Submitted File Name

Multiome_RNA_X038_G5_L005_P040_S19_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

208083521

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1975ZGXC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples