IGVFFI5032ATPC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4662SOHV(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP020_G2_P064_L001_I1

md5sum

93da5b0cdd48aa97365565363dfbc387

Content MD5sum

72ed6b783e58a56c096002e95c3444b5

File Size

428 MB

Submitted File Name

Multiome_RNA_RP020_G2_L002_P064_S20_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223H55LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72364442

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9612VWVL

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples