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IGVFFI5030MAFL

released
validated
File Set
IGVFDS8248GGOY(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 266
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2118_R1
bradley-bernstein:SS-LS_266_R1
buenrostro-bernstein:SS-LS_2118_R1
buenrostro-bernstein:SS-LS_266_R1
md5sum
840eecd73e6636a632582b5f1d3bf5b3
Content MD5sum
77bc0ad98c512388f3602944839b7032
File Size
511 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-200_L2_SS-PKR-131_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
266
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
15687524

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5030MAFL, IGVFFI5768KVWX
Jason Buenrostro, Broad
1.2 KB
validated