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INDEXED
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SequenceFile
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IGVFFI5030DOWN
IGVFFI5030DOWN
released
validated
Json view
File Set
IGVFDS9385ZIKY
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x3_NGS1_r3
md5sum
910e82f83184f77debc2f66bfdced402
Content MD5sum
154f920569f0f90ce87db9f78c40c900
File Size
12 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_3CMAS_IGVF9_A_S23_L005_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
414759777
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2794HHHZ
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0965SWBT
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.6 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0821DHUZ
yaml
seqspec
seqspec of IGVFFI3349BXVM, IGVFFI5030DOWN, IGVFFI7050WCLU, IGVFFI3106XKEE
Ansuman Satpathy, Stanford
1.4 KB
validated