IGVFFI5017SRPT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9077TLNE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP031_G5_P080_L008_R1

md5sum

23051f7e8e820fe4ff0c1df7344143e5

Content MD5sum

95baa1f90eb1335f5d43f65acb563bc6

File Size

13 GB

Submitted File Name

Multiome_RNA_RP031_G5_L005_P080_S41_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

147626366

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2759HMOI

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples