IGVFFI5015CTLK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8759JYNP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP013_G1_P062_L006_R1

md5sum

8536b684c63df3e0f567ceecc98bf933

Content MD5sum

06edadc1060e9128b5aec213cdbca713

File Size

1.7 GB

Submitted File Name

Multiome_RNA_RP013_G1_L001_P062_S21_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223H55LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

83307682

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3819ZCMN

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples