IGVFFI5002HINS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8225TLID(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G8_P055_L002_R3

md5sum

effddd9544303190703b72d4e0cf4fbc

Content MD5sum

2cec0692f22301c05b8cf95a000f63af

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP005_G8_L008_P055_S4_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52896897

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5214FLGB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples