IGVFFI5002DXUG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9809JBNP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G8_P029_L001_R1

md5sum

a0b5e5df3c22e228461ebd5d0388518c

Content MD5sum

6c9325e12d50a4352cfc9fd65fa13940

File Size

8.2 GB

Submitted File Name

Multiome_ATAC_X029_G8_L008_P029_S6_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

154877372

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6160TIJC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples