IGVFFI4998UFQU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7801ASCP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G3_P059_L006_R1

md5sum

66e52545ca30b1787ba664d01317c57c

Content MD5sum

b6d90157556931a52524fffe81873f73

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP012_G3_L003_P059_S83_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58203209

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9610QWFB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples