IGVFFI4979NLTG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0580MSQQ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP020_G2_P063_L005_I1

md5sum

458495652ff3c0fd53c2bc83c75eca21

Content MD5sum

b0e75a33ec06770387f9eff26994f982

File Size

397 MB

Submitted File Name

Multiome_ATAC_RP020_G2_L002_P063_S40_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54781013

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9612VWVL

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples