IGVFFI4948TKXN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3904LNOW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP033_G3_P079_L007_R1

md5sum

3f110ed165d0860b7d1505a9192ddeda

Content MD5sum

d3e0d35d9880a162dff07a3fce1677bc

File Size

11 GB

Submitted File Name

Multiome_ATAC_RP033_G3_L003_P079_S27_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

148633754

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3528WKEF

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples