{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI4942LDZO/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI4942LDZO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl-PCRrep1_I1"
],
"assay_titles": [
"Variant-EFFECTS"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "8c7d72a838f0a2a33767d54e80b0c5b1",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:48:54.122590+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6087TFXW/",
"accession": "IGVFSM6087TFXW",
"classifications": [
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],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released",
"summary": "CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"status": "released",
"term_name": "THP-1"
}
],
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"summary": "THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)",
"taxa": "Homo sapiens"
}
],
"status": "preview",
"summary": "prime editing Variant-EFFECTS"
},
"file_size": 4718399,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI4942LDZO/@@download/IGVFFI4942LDZO.fastq.gz",
"illumina_read_type": "I1",
"index": "GTAACATC:CTGCTTCC",
"input_file_for": [
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],
"integrated_in": [],
"lab": {
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"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 8,
"md5sum": "937f60c557e75e292698d9aa93cdb336",
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"schema_version": "14",
"seqspecs": [],
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X"
},
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"status": "preview",
"submitted_by": {
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"title": "Michael Montgomery"
},
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinNeg-PCRrep1_S807_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "7bcac72d-b429-467d-98aa-e99dbfea44b1"
}