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IGVFFI4939VNGJ

released
validated
File Set
IGVFDS2830OQZA(SUPERSTARR integrating a reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-rna-fastq-k562-P013-R1
md5sum
d4a3a82d4da91eb8e5706bea5555c58a
Content MD5sum
53d3db54d458baf4e69c5ec6d64abe72
File Size
9.2 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.rna.pool13.R1.fastq.gz
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAFJG3FM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
74631647

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files Derived From This File

2 items
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
9.6 GB
validated
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
9.8 GB
validated