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SequenceFile
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IGVFFI4939SIFF
IGVFFI4939SIFF
released
validated
Json view
File Set
IGVFDS6965XHYL
(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 1638
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1638_R2
buenrostro-bernstein:SS-LS_1638_R2
md5sum
2a1a43e8d4f16a453d70b78461ebd96f
Content MD5sum
d06d2ca556d9b494e2f13a6b082ca913
File Size
2.8 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-1135_L3_SS-PKR-6_SS-V2-PLATE2-3rd-THIRD_R2.fastq.gz
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1638
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
55834665
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4247WODL
PrimaryCell
bone marrow
bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (37 years)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3038HSVX
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
639 MB
validated
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad