IGVFFI4904XYIS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3959TIPT(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G1_P043_L008_R2

md5sum

73a904c34d3b8a550cf5de5d1ee4133c

Content MD5sum

bb57c17ac55e30c7d9c8783be77ace6a

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X042_G1_L001_P043_S19_L008_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62516252

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8971IRDZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples