IGVFFI4900PHZQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0356QKID(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G5_P053_L004_R3

md5sum

0efdda4a2442155311cb221fd6ccb19a

Content MD5sum

6a3a871588943737330d652685955be2

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP004_G5_L005_P053_S13_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79268963

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1516CHMP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples