IGVFFI4899ECJC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3284TIFO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G2_P013_L001_I1

md5sum

6eac8d87e8a59ad8f5d58dfc71220e37

Content MD5sum

dca0af13b29afeda3d59ebfe40f5c2fc

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X015_G2_L002_P013_S8_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

244775344

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7474GXHG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples