IGVFFI4896MQFJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3602NEYS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G5_P059_L008_R1

md5sum

b327fe463bc73d0e0ece4d6e6ea346f8

Content MD5sum

fcb2affe669752c421497b5bb62f273a

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP011_G5_L005_P059_S77_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53584236

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0643EUKR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples