IGVFFI4888YWOV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5996MZTB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X007_G1_P005_L001_R1

md5sum

852893c68e9ab6897258549803173f56

Content MD5sum

2003a738c5c568e3640c4f1bcf67281d

File Size

14 GB

Submitted File Name

Multiome_ATAC_X007_G1_L001_P005_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

268907832

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6141OLJP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) putamen tissue; Homo sapiens (male, 90 or above years) cerebellar cortex tissue; ... and 10 more samples